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biologia

Università degli Studi di Perugia biotecnologie 2022
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  • Nucleotide & DNA Structure:
    • Nucleotides are monomers composed of a pentose sugar and a nitrogenous base.
    • DNA features 4 bases (A, C, G, T), anti-parallel strands, and stable hydrogen bonds between complementary bases (3 for C-G, 2 for T-A).
    • The constant diameter of DNA ensures stability, recognized by repair systems.
    • Phosphodiester bonds are strong covalent linkages forming the DNA backbone (5'-3' direction).
  • DNA Conformations & Denaturation:
    • DNA exists in B, A, and Z forms, differing in shape and accessibility of grooves for protein interaction.
    • DNA denaturation (strand separation) is carried out by helicases, breaking hydrogen bonds, and can be induced in labs by heat or ionic changes.
  • Histones:
    • Found in eukaryotes, histones are proteins that compact DNA into a cylindrical structure, forming nucleosomes. Histone H1 helps maintain DNA wrapping.
  • DNA Replication:
    • A semi-conservative process, where each parental strand serves as a template for a new identical daughter molecule.
    • Requires RNA primers for initiation, DNA polymerases for synthesis (5'-3' direction), and various proteins like topoisomerases (to relieve supercoiling) and SSB proteins (to stabilize single strands).
    • In eukaryotes, replication starts at multiple origins, producing Okazaki fragments on the lagging strand.
  • Key Replication Proteins (Eukaryotes):
    • DNA Polymerase α (primer synthesis), DNA Polymerase δ (DNA synthesis), PCNA (processivity), Replication factors C and A (elongation/SSB), Topoisomerases I and II (strand separation), FEN1 (RNA primer removal), DNA Ligase (nick sealing).
  • Telomerase:
    • A specialized DNA polymerase that uses an RNA template (reverse transcriptase activity) to synthesize DNA at telomeres, compensating for end replication problems and preventing DNA damage due to shortening.
  • Transcription:
    • The process of synthesizing RNA from a DNA template, occurring in a 5'-3' direction.
    • In eukaryotes, primary transcripts (pre-mRNA) undergo modifications like splicing (removal of non-coding sequences) and the addition of a 5' cap.
    • The 5' cap protects mRNA from degradation and aids in ribosome binding.
  • Actin:
    • A key cytoskeleton protein existing as G-actin (monomer) and F-actin (polymerized filament).
    • F-actin forms bundles and networks, providing structural support and enabling cell contraction through interaction with myosin 2.
    • ATP hydrolysis to ADP is crucial for G-actin to F-actin conversion.
  • Intermediate Filaments:
    • Cytoskeletal components found in all cells, providing structural integrity. Nuclear lamins are a specific type of intermediate filament.
  • Myosin:
    • Motor proteins, like Myosin II, interact with actin to facilitate cell movement and contraction, utilizing ATP for energy (e.g., “colpo di frusta” mechanism).

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